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View Structure Prediction Details

Protein: lim-4
Organism: Caenorhabditis elegans
Length: 355 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lim-4.

Description E-value Query
Range
Subject
Range
gi|73947291 - gi|73947291|ref|XP_541354.2| PREDICTED: similar to Zinc finger protein 606 (Zinc finger protein 328)...
331.0 [0..2] [349..2540]

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Predicted Domain #1
Region A:
Residues: [1-222]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAHLVQAKK TSTASELSDS SLTFPFIGDY LSSPSLTTSD YVSDCSNLTV EGPVPANQEF  60
   61 SSSDESSVYI SSALRLADYA FTPDDNIRIK PDAVIVICTQ CQHQIQDKFF LSIDGRNYHE 120
  121 NCLQCSTCEN PLSNKCFYKD KTFYCKGCYF RTHVTSTASS CRELGPKCAS CDRTIQATDW 180
  181 VRRARNYVYH LACFSCNQCK RQLSTGEEYA LQEGNLLCKQ HF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.0
Match: 2i13A
Description: No description for 2i13A was found.

Predicted Domain #2
Region A:
Residues: [223-355]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LELVEGDSGV SSQKAKTKRV RTTFAEDQLS VLQTYFNRDS NPDGADLEKI ASMTGLSKRV  60
   61 TQVWFQNSRA RQKKWHQKSE GDNGDSQRSS VGPSSPSQKS DSSSEMMYPT SVTTSVEDAI 120
  121 PDSIVILGSL QFD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.69897
Match: 2dmqA
Description: No description for 2dmqA was found.

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