YRC Public Data Repository - Protein Structure Prediction

Protein:	CE25560
Organism:	Caenorhabditis elegans
Length:	332 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE25560.

Description	E-value	Query Range	Subject Range
gi\|39595552, gi\|... - gi\|39595552\|emb\|CAE60590.1\| Hypothetical protein CBG04226 [Caenorhabditis briggsae], gi\|187036369\|em... gi\|157746431 - gi\|157746431\|ref\|XP_001668311.1\| Hypothetical protein CBG04226 [Caenorhabditis briggsae AF16]	204.0	[0..4]	[327..3]

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Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNQRHHYND YEDVRMLKWV ARNDKSLGPF GIITWQLYVE AYNCPYSVQS LCGRMRRQIV  60
   61 PNIDYYSRHL KSSDLISLER RFGSRLGAET RKYIRNLAVK TVKIVQVVAS RPVEKNSEIE 120
  121 VQKVASLELQ AAPTAPTTSA AQLGKTKSPG ARTQRIERND ELSRDVFESS CASTIVEPEP 180
  181 PQEEPPQR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [189-332]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SHNWKTEMRK IAGQAAQAIN DLIRQTVENN DFNKKMFAEL ENQQNLDHLY GKMFDDPNKA  60
   61 DWIMIDVKKF TENHLRMQYF RKIREELHKR FTNQHIIRAV FCFFQFFEYY VTVCVDESTD 120
  121 NYILLMNKVL EMSIKLLPLY IVHC