YRC Public Data Repository - Protein Structure Prediction

Protein:	CE25560
Organism:	Caenorhabditis elegans
Length:	332 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE25560.

Description	E-value	Query Range	Subject Range
gi\|39595552, gi\|... - gi\|39595552\|emb\|CAE60590.1\| Hypothetical protein CBG04226 [Caenorhabditis briggsae], gi\|187036369\|em... gi\|157746431 - gi\|157746431\|ref\|XP_001668311.1\| Hypothetical protein CBG04226 [Caenorhabditis briggsae AF16]	204.0	[0..4]	[327..3]

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Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNQRHHYND YEDVRMLKWV ARNDKSLGPF GIITWQLYVE AYNCPYSVQS LCGRMRRQIV  60
   61 PNIDYYSRHL KSSDLISLER RFGSRLGAET RKYIRNLAVK TVKIVQVVAS RPVEKNSEIE 120
  121 VQKVASLELQ AAPTAPTTSA AQLGKTKSPG ARTQRIERND ELSRDVFESS CASTIVEPEP 180
  181 PQEEPPQR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [189-332]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SHNWKTEMRK IAGQAAQAIN DLIRQTVENN DFNKKMFAEL ENQQNLDHLY GKMFDDPNKA  60
   61 DWIMIDVKKF TENHLRMQYF RKIREELHKR FTNQHIIRAV FCFFQFFEYY VTVCVDESTD 120
  121 NYILLMNKVL EMSIKLLPLY IVHC