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View Structure Prediction Details

Protein: deps-1
Organism: Caenorhabditis elegans
Length: 619 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for deps-1.

Description E-value Query
Range
Subject
Range
gi|157744863 - gi|157744863|ref|XP_001667528.1| Hypothetical protein CBG22004 [Caenorhabditis briggsae AF16]
gi|187021914, gi... - gi|39589270|emb|CAE74299.1| Hypothetical protein CBG22004 [Caenorhabditis briggsae], gi|187021914|em...
1162.0 [0..9] [616..10]

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Predicted Domain #1
Region A:
Residues: [1-216]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSERQSKYFD YQGIVISSTG QDNQDSETDL VYLIQAHGKA APKNIMYGVS KCAFVPTNLE  60
   61 RNFDNIEEAK NLERRSKIPL KFGEVILWNE SDCDHDKRII LHIKREKPIY EASSSRNGLI 120
  121 LKVGGVIQPT STTSFWTPLC TVTMPETEAT RAEPDVWLYA WIRFETTMKS GLDPFNMTAT 180
  181 FESFDSCDPS DQARVCEAPW NAGSPDSKFG VWRPDP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [217-446]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPADSDDEID IEPREGWHLP EDKWAEVIKM QLGLYVGERL LICKELSQFD FIIPLQKPFS  60
   61 RGTDKTLIYP AVGEYFHFSA IWSMQHNGFL IYELQPVPLL RQHVTSVNGN LLTRVVPASI 120
  121 RGLFVDKEGT LGLIDDPHHL LSFFEFHPAG YEFLKAMAEV RAVRTSENKS VRYRIVRTSG 180
  181 MSIFENWLRD TQFVVGPVKG IRINEDTVIC AKHPNVYFKI PNNLKEGIPI 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [447-619]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGGVQFVGKR QAGVDSEIMI TECSPCPAFT CKNYSVSGDT RLFQVYLKPN CDHEQLAESD  60
   61 SMGFVDFREL ETPCRGKFLA WVRESITVND CRRAATIMEV CSTAICPPLI AMSANSSRAT 120
  121 SARTTPAGSS IGSRSSIQSR ASAATSVSSN RFVGPSSRRT PSGTPQSSTS SRV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle