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View Structure Prediction Details

Protein: CE25310
Organism: Caenorhabditis elegans
Length: 447 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE25310.

Description E-value Query
Range
Subject
Range
CE25311 - status:Partially_confirmed UniProt:Q9TW59 protein_id:CAB61043.1
582.0 [0..28] [434..343]

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Predicted Domain #1
Region A:
Residues: [1-138]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDPVEGKGG PQPRGGKKKD ADDEKNAWEE GDFIDEKELK GALQLGVLKT ADSVALRAGE  60
   61 RNGLDMVVEE DVVSQVGALV WDTVAQDWAD DLARFVAHAG RQRVNMDDIS LLTRRNPDLL 120
  121 RAACELAGVD CPQETSGG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [139-253]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TKGKPRKRKK DDVTVAPMLR AAPSAPNSQN APLLAPIQEE DDENDDDDEI TILDDQILHT  60
   61 PQQKSYSKKA KFSEEEAPSS RKRISTSTPK TTAERTLKFP DEITPIRQPN DLQEI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [254-447]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VVFNRANLSA IEEEEQQDSF DAFGTTGGND SSSKTITNTS SLLRQAEEHR SSIVEPTKDR  60
   61 IEKERLDRLV PDDEEFENAS VDSFDNFNAE PDPAPAPALA PVPEKRTSVF SKKICSFDFD 120
  121 DDDGDDSFDE PVVVVAEVPK LPVQQQKTPK ASGSESKKKP EKRPESSTPS VFSKKNKTIQ 180
  181 LDDHDSFDDF DFGI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle