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View Structure Prediction Details

Protein: CE25196
Organism: Caenorhabditis elegans
Length: 236 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE25196.

Description E-value Query
Range
Subject
Range
gi|73950822 - gi|73950822|ref|XP_535393.2| PREDICTED: similar to Adaptin ear-binding coat-associated protein 2 (NE...
350.0 [0..2] [236..4]

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Predicted Domain #1
Region A:
Residues: [1-162]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDYENVLMV KPKVFVYRIP PIGTSGHKAA DWNLDSPAWT GRMRLVAIGK RLEMRLEDGE  60
   61 TCDLYAKCPI DAHPGNAIEA VSDSSRYFVI RLQNDNGQQA FVGCGFQERG DAFDFNVTLQ 120
  121 DHFRYIERSA ELEKQDLSAG PSLDLAFKEG QTISINIGKK DK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 66.09691
Match: 1tqzA
Description: Solution structure of NECAP1 protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.597587183571285 bayes_pls_golite062009
protein binding 0.29116370406325 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [163-236]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAVSRPRPAP GASTGGLVPL LPPPPGAGSM IRNSRPSTTT TTASSSLSSA FAAPPPAPSS  60
   61 STSTTATSGN LLDF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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