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View Structure Prediction Details

Protein: ccb-2
Organism: Caenorhabditis elegans
Length: 357 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ccb-2.

Description E-value Query
Range
Subject
Range
gi|223461056, gi... - gi|7549225|gb|AAF63790.1|AF199009_1 PALS2-alpha splice variant [Mus musculus], gi|223461056|gb|AAI38...
286.0 [0..1] [352..157]

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Predicted Domain #1
Region A:
Residues: [1-357]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSVARENLQ AYLHSYKLSS NEPGIKLMHN SQRDDQHRKD VEHFAALRAL QHSKRKHVAF  60
   61 AVQAMRDYDG SLDEKSPLKD HTISFNTNDF IHIHTKFNSD WWIGRIVRSH SEFGFVPTAR 120
  121 RLANYMVSDE DPPVKHNTSD HQDRSIWEPK CPYKVVPSSR PIVLLGPTLQ HSRLTQLLHL 180
  181 ALREEILKHF GKNMKYVKSD IGSGQQSGDR KGARWLRGLR DYDRGQDENQ EVELIMRMTS 240
  241 KLHLLLVDSP HIHTPDDVQH LPLSPIFFLI RVSDNKILAK LLRNTGTTRM AAEIEVANVL 300
  301 KTMNDDRVGG HDDEQLIARG FEMVIEENGL REATRRIISY LEKYIHALHY HHKDDEI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 56.0
Match: 1t3lA
Description: Structural Analysis of the Voltage-Dependent Calcium Channel Beta Subunit Functional Core in Complex with Alpha1 Interaction Domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.470983068319171 bayes_pls_golite062009
hydrolase activity 0.0582794297634999 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle