| Protein: | fox-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 415 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for fox-1.
| Description | E-value | Query Range |
Subject Range |
|
|
243.0 | [0..8] | [401..71] |
|
Region A: Residues: [1-128] |
1 11 21 31 41 51
| | | | | |
1 MQALYQLSAT GAQQQNQQIP IGLSNSLLYQ QLAAHQQIAA QQHQQQLAVS AAHQTQNNIM 60
61 LATSAPSLIN HMENSTDGKV KDDPNSDYDL QLSIQQQLAA AAQAAQMGQT QIGPQIVGQQ 120
121 GQPVVATT
|
| Detection Method: |  |
| Confidence: | 7.30103 |
| Match: | 2cq4A |
| Description: | solution structure of RNA binding domain in RNA binding motif protein 23 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [129-229] |
1 11 21 31 41 51
| | | | | |
1 AGSTNGSAAV TQPDPSTSSG PDGPKRLHVS NIPFRFRDPD LKTMFEKFGV VSDVEIIFNE 60
61 RGSKGFGFVT MERPQDAERA RQELHGSMIE GRKIEVNCAT A
|
| Detection Method: | |
| Confidence: | 21.0 |
| Match: | 2errA |
| Description: | NMR Structure of the RNA Binding Domain of Human Fox-1 in Complex with UGCAUGU |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [230-312] |
1 11 21 31 41 51
| | | | | |
1 RVHSKKVKPT GGILDQMNPL MAQSALAAQA QMNRALLLRS PLVAQSLLGR GAALIPGMQQ 60
61 PAFQLQAALA GNPLAQLQGQ PLL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [313-415] |
1 11 21 31 41 51
| | | | | |
1 FNAAALQTNA LQQSAFGMDP AAVQAALLAN EQARFQLAAA AAQGNEYIMY HQAKQQELPG 60
61 RIPSSGNASA FGEQYLSNAL ATASLPSYQM NPALRTLNRF TPY
|
| Detection Method: | |
| Confidence: | 3.221849 |
| Match: | 1g9lA |
| Description: | poly(A) binding protein |
Matching Structure (courtesy of the PDB): |
|
