| Protein: | avr-15 |
| Organism: | Caenorhabditis elegans |
| Length: | 657 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for avr-15.
| Description | E-value | Query Range |
Subject Range |
|
|
460.0 | [0..1] | [657..1] |
|
Region A: Residues: [1-170] |
1 11 21 31 41 51
| | | | | |
1 MIGRLRRGFI LFPQLFLLFV SISSIFLFVL VECKPPKSLN RMRSKGTYNA AAFNSPSMIN 60
61 NGLLLAGFEN NDTSRETRES YEEYKDDIDH LLEGDLTFYD EGADTAAGDV VITSETPVEK 120
121 HKEVHFKNEP EEEEIGKEDD GGGEAEEGEY EEENGSDAEE EEESPEKVEP
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [171-226] |
1 11 21 31 41 51
| | | | | |
1 ATSTITTEAQ TTTTPEEVTQ DVSDNIEDDE DARPKSEEHS PKHAASSSDL FEDDDQ
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [227-569] |
1 11 21 31 41 51
| | | | | |
1 STTLESIARL SAPAHVPIEQ PQTSDTEILE HLLTRGYDHR VRPPGEDGTI HGGPVVVSVN 60
61 MLLRSISKID NVNMEYSVQL TFRESWVDKR LSFGVKGDAQ PDFLILTAGQ EIWMPDSFFQ 120
121 NEKQAYKHMI DKPNVLIRVH KDGTILYSVR ISLVLSCPMH LQYYPMDVQQ CFIDLASYAY 180
181 TTKDIEYVWK EETPVQLKAG LSSSLPSFQL TNTSTTYCTS KTNTGSYSCL RTIIQLRRQF 240
241 SYYLLQLYIP SCMLVIVSWV SFWIDRTAVP ARVTLGVTTL LTMTTQSSGI NAKLPPVAYI 300
301 KAIDVWIGAC MTFIFCALLE FAWVTYIANK QDANKRARTE REK
|
| Detection Method: | |
| Confidence: | 82.09691 |
| Match: | 2bg9A |
| Description: | Refined structure of the nicotinic acetylcholine receptor at 4A resolution. |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [570-657] |
1 11 21 31 41 51
| | | | | |
1 AELPFLQNSH NDVWVPREVA EQEREVMTVR MNRRQTNSVW KWIKTKTEWN DKSKRADLIS 60
61 RVMFPVLFLT FNISYWTHYG QYGVAIST
|
| Detection Method: | |
| Confidence: | 32.69897 |
| Match: | 1oedA |
| Description: | Acetylcholine receptor protein, alpha chain |
Matching Structure (courtesy of the PDB): |
|
