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View Structure Prediction Details

Protein: CE24973
Organism: Caenorhabditis elegans
Length: 390 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE24973.

Description E-value Query
Range
Subject
Range
gi|187021403, gi... - gi|39587395|emb|CAE75049.1| Hypothetical protein CBG22962 [Caenorhabditis briggsae], gi|187021403|em...
gi|157777224 - gi|157777224|ref|XP_001666678.1| hypothetical protein CBG22962 [Caenorhabditis briggsae AF16]
222.0 [0..14] [388..12]

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Predicted Domain #1
Region A:
Residues: [1-64]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASPEASSSG NTEDLRIEDL FHQKRNEDTI AKIFSIIYAP VGLIILLIRV FLGFHTFIVA  60
   61 CLLR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [65-281]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSAALRMHTL RIMCSILGIV VEKSGHRDES ARVLCANHVS ILDHLAVDIL TPCLLPSVWD  60
   61 IPSIIRWCFG YVDLGATRGR DQLVSRAKQL LTREQMPLLA FPEGIITSGE KALIKFNTWC 120
  121 FEVSSVVQPV SVRVWRPYPW KVSVSVLGSS WWTDLFYFFA LPFTVITVEY LPKMERRENE 180
  181 SLEEFTARVA ETLAGNLKIA VSKFGISDAT EAAKRLR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.154902
Match: 1iuqA
Description: The 1.55 A Crystal Structure of Glycerol-3-Phosphate Acyltransferase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [282-390]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDRERAKKVV VREKTSPRLA DPRQMDECAM RIKQSFPSFH LSAIRRDLEK TRSQTTTVNN  60
   61 LKAGKISSSA SDGQTGKVTL DAGTWRGVFD NRKWQMIEVN RQKYMNRDS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.0
Match: 2ekfA
Description: No description for 2ekfA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle