YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE24973
Organism: Caenorhabditis elegans
Length: 390 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE24973.

Description E-value Query
Range
Subject
Range
gi|187021403, gi... - gi|39587395|emb|CAE75049.1| Hypothetical protein CBG22962 [Caenorhabditis briggsae], gi|187021403|em...
gi|157777224 - gi|157777224|ref|XP_001666678.1| hypothetical protein CBG22962 [Caenorhabditis briggsae AF16]
222.0 [0..14] [388..12]

Back

Predicted Domain #1
Region A:
Residues: [1-64]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASPEASSSG NTEDLRIEDL FHQKRNEDTI AKIFSIIYAP VGLIILLIRV FLGFHTFIVA  60
   61 CLLR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [65-281]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSAALRMHTL RIMCSILGIV VEKSGHRDES ARVLCANHVS ILDHLAVDIL TPCLLPSVWD  60
   61 IPSIIRWCFG YVDLGATRGR DQLVSRAKQL LTREQMPLLA FPEGIITSGE KALIKFNTWC 120
  121 FEVSSVVQPV SVRVWRPYPW KVSVSVLGSS WWTDLFYFFA LPFTVITVEY LPKMERRENE 180
  181 SLEEFTARVA ETLAGNLKIA VSKFGISDAT EAAKRLR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.154902
Match: 1iuqA
Description: The 1.55 A Crystal Structure of Glycerol-3-Phosphate Acyltransferase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [282-390]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDRERAKKVV VREKTSPRLA DPRQMDECAM RIKQSFPSFH LSAIRRDLEK TRSQTTTVNN  60
   61 LKAGKISSSA SDGQTGKVTL DAGTWRGVFD NRKWQMIEVN RQKYMNRDS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.0
Match: 2ekfA
Description: No description for 2ekfA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle