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View Structure Prediction Details

Protein: CE24871
Organism: Caenorhabditis elegans
Length: 504 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE24871.

Description E-value Query
Range
Subject
Range
gi|70878103 - gi|70878103|gb|EAN91386.1| trans-sialidase, putative [Trypanosoma cruzi]
gi|71648919 - gi|71648919|ref|XP_813237.1| trans-sialidase [Trypanosoma cruzi strain CL Brener]
209.0 [0..2] [501..797]

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Predicted Domain #1
Region A:
Residues: [1-209]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDISLDYEG SSDDSRSSRS SSRENRRRTN SGSGDKDKPM WKSKRDSSRS SRSRSRSSSE  60
   61 SDSRSRSSSP VVKNSPPKRK REPIRAPSAS PPRRRRDDSP RKRSRSPPRR TRRSPSPPRR 120
  121 RRISRSPVRR SRSPPRRQVS RSRSPPPRRQ QRSRSPPPAK RRRDQSRSKS PPRRNYRQRQ 180
  181 RSGSPPVRNW RDEEENRRAE MWSKRRFQR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [210-504]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VNIQADGLNN IWGHSPTHEE IHDTYKLRVA AEEIQAENEK KREELKEDRR KEKKREMRAV  60
   61 RNVSEDDSST SSESEESDFE QKKKKKVKKS KKSKKDKKKE KKEKKKSKKA NKEKEERRAR 120
  121 REQRKKERAE LKRKINNRSD TEEEWEEKQS EKIVGTIGTW KEGSMSPTPI LPEHIKQRDQ 180
  181 GGGYDVEKPG NYGKDLLKGE GAGMAAYAAR GERIPRRGEI GLSSGEIAEY EKVGYVMSGS 240
  241 RHKAMEATRL RKENQVFTAE EKRILNSVSV EAKKKKEEAV LDQFRNLIHH KNMRN

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.967
Match: 2i1jA
Description: No description for 2i1jA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle