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View Structure Prediction Details

Protein: CE24669
Organism: Caenorhabditis elegans
Length: 373 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE24669.

Description E-value Query
Range
Subject
Range
gi|76638915 - gi|76638915|ref|XP_884075.1| PREDICTED: similar to F-box/LRR-repeat protein 10 (F-box and leucine-ri...
274.0 [0..18] [368..375]

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Predicted Domain #1
Region A:
Residues: [1-186]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMMHMGAPM NGGPPPPQML QMHHPLPHHV AVFAHGSSSQ NSQAPPLQAA SATPPVPSSM  60
   61 NRSQSRASCP QSTREMSSHR STTSRRCGVC RGCQCKPCGQ CTYCQDSPQF GGPGVKKQSC 120
  121 IERRCLRVLE NRLQRDAPTF KARVGCNACE DCRMQDCQIC LVCLDKRFFE NRHIPGAMCA 180
  181 KKRCNN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.09691
Match: 2j2sA
Description: No description for 2j2sA was found.

Predicted Domain #2
Region A:
Residues: [187-253]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AQSIECVPSL MSQNPADFVQ RAPKRSYELI NPVISQQQQQ QQSQMHFDVK RVQYMTGPPP  60
   61 QMMQQMQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [254-373]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQAPPQQQIP QPQTPQQQVQ QHQQRPNYLS VHARLMVQAP PQVITAPAPI PLPQGQMTHM  60
   61 PQHGLDIPYL IPTSFVQAVQ GQADPFYPSK FELDFEHNGD PFVPPSYAQD MKGQVVLQQL 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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