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View Structure Prediction Details

Protein: CE24669
Organism: Caenorhabditis elegans
Length: 373 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE24669.

Description E-value Query
Range
Subject
Range
gi|76638915 - gi|76638915|ref|XP_884075.1| PREDICTED: similar to F-box/LRR-repeat protein 10 (F-box and leucine-ri...
274.0 [0..18] [368..375]

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Predicted Domain #1
Region A:
Residues: [1-186]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMMHMGAPM NGGPPPPQML QMHHPLPHHV AVFAHGSSSQ NSQAPPLQAA SATPPVPSSM  60
   61 NRSQSRASCP QSTREMSSHR STTSRRCGVC RGCQCKPCGQ CTYCQDSPQF GGPGVKKQSC 120
  121 IERRCLRVLE NRLQRDAPTF KARVGCNACE DCRMQDCQIC LVCLDKRFFE NRHIPGAMCA 180
  181 KKRCNN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.09691
Match: 2j2sA
Description: No description for 2j2sA was found.

Predicted Domain #2
Region A:
Residues: [187-253]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AQSIECVPSL MSQNPADFVQ RAPKRSYELI NPVISQQQQQ QQSQMHFDVK RVQYMTGPPP  60
   61 QMMQQMQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [254-373]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQAPPQQQIP QPQTPQQQVQ QHQQRPNYLS VHARLMVQAP PQVITAPAPI PLPQGQMTHM  60
   61 PQHGLDIPYL IPTSFVQAVQ GQADPFYPSK FELDFEHNGD PFVPPSYAQD MKGQVVLQQL 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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