YRC Public Data Repository - Protein Structure Prediction

Protein:	rps-4
Organism:	Caenorhabditis elegans
Length:	259 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rps-4.

Description	E-value	Query Range	Subject Range
RS4X_MACFU - 40S ribosomal protein S4, X isoform OS=Macaca fuscata fuscata GN=RPS4X PE=2 SV=3 RS4X_MESAU - 40S ribosomal protein S4, X isoform OS=Mesocricetus auratus GN=RPS4X PE=2 SV=2 RS4X_FELCA - 40S ribosomal protein S4, X isoform OS=Felis catus GN=RPS4X PE=2 SV=2 RS4X_CHLAE - 40S ribosomal protein S4, X isoform OS=Chlorocebus aethiops GN=RPS4X PE=2 SV=3 gi\|6519820 - gi\|6519820\|dbj\|BAA87932.1\| ribosomal protein S4X (RPS4X) [Macaca fuscata] gi\|1083572 - gi\|1083572\|pir\|\|A55276 ribosomal protein S4 - western wild mouse gi\|2148029, gi\|2... - gi\|220321\|dbj\|BAA01858.1\| ribosomal protein S4 [Mesocricetus sp.], gi\|2148029\|pir\|\|I48169 ribosomal ... gi\|57135 - gi\|57135\|emb\|CAA32427.1\| unnamed protein product [Rattus rattus] gi\|114689107, gi... - gi\|114689107\|ref\|XP_001139217.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes], gi\|114... gi\|149759012, gi... - gi\|255653020\|ref\|NP_001157422.1\| ribosomal protein S4 [Equus caballus], gi\|149759012\|ref\|XP_00148806... gi\|123993841, gi... - gi\|123996497\|gb\|ABM85850.1\| ribosomal protein S4, X-linked [synthetic construct], gi\|123993841\|gb\|AB... RS4X_MOUSE - 40S ribosomal protein S4, X isoform OS=Mus musculus GN=Rps4x PE=1 SV=2 gi\|109131194 - gi\|109131194\|ref\|XP_001093393.1\| PREDICTED: similar to 40S ribosomal protein S4, X isoform [Macaca m... gi\|90075468 - gi\|90075468\|dbj\|BAE87414.1\| unnamed protein product [Macaca fascicularis] RS4X_RAT - 40S ribosomal protein S4, X isoform OS=Rattus norvegicus GN=Rps4x PE=2 SV=2 RPS4X - ribosomal protein S4, X-linked RS4_BOVIN - 40S ribosomal protein S4 OS=Bos taurus GN=RPS4 PE=2 SV=3 ENSCJAT00000008044 - null	477.0	[0..2]	[259..3]

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Predicted Domain #1

Region A:
Residues: [1-66]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGPKKHLKR LAAPSHWMLD KLGGVFAVRP NPGPHKLRES LPLSLFLRNR LKYALNYTEA  60
   61 KKILTQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [67-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RVVRVDGKVR TCHKFPTGFM DVVAIERTNE YFRMLYDTKG RYVVHRIQAA EADFKLCKVK  60
   61 SVRTVNKGVP VLTTTDGRTI RYPDPHVKVN DTIVFNISTQ KITDSVKFEP GNLAYVTGG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	30.958607
Match:	PF00900.11
Description:	No description for PF00900.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [186-259]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RNVGRVGIIG HRERLPGASD IIHIKDSAGH SFATRISNVF VIGKGNKALV SLPTGAGIRL  60
   61 SIAEERDKRM AQKH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits