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View Structure Prediction Details

Protein: hut-1
Organism: Caenorhabditis elegans
Length: 340 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hut-1.

Description E-value Query
Range
Subject
Range
gi|111619247, gi... - gi|111619247|ref|ZP_01406261.1| Protein of unknown function DUF6, transmembrane [Acidovorax avenae s...
147.0 [0..46] [321..421]

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Predicted Domain #1
Region A:
Residues: [1-83]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKNHETPHH HGEVRSWLAE SGHFLICAGG ILICYFVFGI QQERIVQGKY ELPDESIEKF  60
   61 TFTQALVFFL CTANTIYAFL IRK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [84-173]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTEIDNVPTK MYAASAASYL LAMVASNQAL QYLPYPTQVL AKSCKPIPVM IFGVLFAHKS  60
   61 YHWRKYCYVL MIVVGVAMFL YKNKKGGAED 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.07
Match: 2i68A
Description: No description for 2i68A was found.

Predicted Domain #3
Region A:
Residues: [174-340]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDFGFGELLL IFSLAMDGTT TSIQDRIKKS YQRTGTSMMF YTNLYSSLYL SAGLLVTGEL  60
   61 WSFFYFVQRH PYVFWDLTGL AIASCLGQWC IFKTIEEFSP LTCSIVTTTR KLFTIIISVL 120
  121 FMNHPLSGRQ ILATTVVFSA LTADVVDGKM TAAKKPLAAT EPKVHNK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle