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View Structure Prediction Details

Protein: hut-1
Organism: Caenorhabditis elegans
Length: 340 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hut-1.

Description E-value Query
Range
Subject
Range
gi|111619247, gi... - gi|111619247|ref|ZP_01406261.1| Protein of unknown function DUF6, transmembrane [Acidovorax avenae s...
147.0 [0..46] [321..421]

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Predicted Domain #1
Region A:
Residues: [1-83]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKNHETPHH HGEVRSWLAE SGHFLICAGG ILICYFVFGI QQERIVQGKY ELPDESIEKF  60
   61 TFTQALVFFL CTANTIYAFL IRK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [84-173]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTEIDNVPTK MYAASAASYL LAMVASNQAL QYLPYPTQVL AKSCKPIPVM IFGVLFAHKS  60
   61 YHWRKYCYVL MIVVGVAMFL YKNKKGGAED 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.07
Match: 2i68A
Description: No description for 2i68A was found.

Predicted Domain #3
Region A:
Residues: [174-340]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDFGFGELLL IFSLAMDGTT TSIQDRIKKS YQRTGTSMMF YTNLYSSLYL SAGLLVTGEL  60
   61 WSFFYFVQRH PYVFWDLTGL AIASCLGQWC IFKTIEEFSP LTCSIVTTTR KLFTIIISVL 120
  121 FMNHPLSGRQ ILATTVVFSA LTADVVDGKM TAAKKPLAAT EPKVHNK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle