YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE22939
Organism: Caenorhabditis elegans
Length: 121 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE22939.

Description E-value Query
Range
Subject
Range
CRE25493 - RP02953 WBGene00054915 status:Confirmed
gi|187031308, gi... - gi|39590614|emb|CAE64984.1| Hypothetical protein CBG09819 [Caenorhabditis briggsae], gi|187031308|em...
gi|157774099 - gi|157774099|ref|XP_001665115.1| hypothetical protein CBG09819 [Caenorhabditis briggsae AF16]
162.0 [0..1] [121..1]

Back

Predicted Domain #1
Region A:
Residues: [1-121]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVEVEVPPT TYERLQQYKE KFSDALRHPD SPDWYKKETH ESVKKDLLWA APYDARFPQV  60
   61 RKQRQCFAYY VDFHRCNELM GQDYKPCKFF QNVYKDFCPG FWTERWDELL SEGRFPAKFD 120
  121 R

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.39794
Match: 1occH
Description: Cytochrome c oxidase subunit h
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
cytochrome-c oxidase activity 4.43411953394546 bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors 4.43411953394546 bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor 4.43411953394546 bayes_pls_golite062009
heme-copper terminal oxidase activity 4.19888886424808 bayes_pls_golite062009
oxidoreductase activity 0.752048158422834 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle