| Protein: | mab-20 |
| Organism: | Caenorhabditis elegans |
| Length: | 658 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mab-20.
| Description | E-value | Query Range |
Subject Range |
|
|
454.0 | [0..8] | [658..30] |
|
Region A: Residues: [1-658] |
1 11 21 31 41 51
| | | | | |
1 MRNFLVFSVI FIAYNSCEAA NIQADNTFAD PNIGEFRELL IDPKAGALFV GSEGAIFRLW 60
61 AYNINDTGEN VFAKKQLVLS ESEESECRST ASDERLCRPS TRFLAFTNNL DSIYVCSSVG 120
121 MRPEIRVLDS LSLRDQQEPR TEIGICVVDP TFNFTAVVVD SGNPEDATSV YSGIRTGMGG 180
181 ENHLIYRPPL TKNGKQLHAS IRTIYSDNKW LNEPQFVGSF DVGQHVFFFF REIAHDNSFG 240
241 ERIVHSRVAR VCKKDIGGRN VLRQVWTSFV KARLNCSVSA NFPFYFDHIQ SVKRVDKHGE 300
301 TYFYATFSTS ETAFTSSAIC MFQLSSINHL LDTGLLMEET ANGQFSVTAD EIPAHRPGTC 360
361 SQNSHSISDT DLHFAKTHLL VSDSISGGTP ILPLRDHVFT HIVVDQLPNQ NVIFAFDSAN 420
421 RRVWKISHWK EGNEWKSNLI EEKSLKIAAS RINDVALLPA EFFFVTSGAG VSQFSVARCS 480
481 EQPSCALCSL DPYCSWNAVN SKCSLKTKTN EKSVGWISSS WAGRISPECS AVEKLTVKDV 540
541 YLGDGLRLVG AKNGVWQKDG RSVESGQRHV VTRNGELVVL DAQLEDAGTY ECLRDNIILV 600
601 RARIVVHENC ARPTSVAEYR SCQREWCKKA DAYKAALNIW SDSNKKNVQC KANTSSAH
|
| Detection Method: |  |
| Confidence: | 107.0 |
| Match: | 1olzA |
| Description: | The ligand-binding face of the semaphorins revealed by the high resolution crystal structure of SEMA4D |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| antigen binding | 4.06466268219034 | bayes_pls_golite062009 |
| receptor binding | 1.69538764684177 | bayes_pls_golite062009 |
| binding | 1.30764958471421 | bayes_pls_golite062009 |
| chemorepellent activity | 1.00465333987168 | bayes_pls_golite062009 |
| protein binding | 0.874236375624771 | bayes_pls_golite062009 |
| platelet-derived growth factor receptor binding | 0.68620352874827 | bayes_pls_golite062009 |
| integrin binding | 0.47704880649188 | bayes_pls_golite062009 |
| fibroblast growth factor 1 binding | 0.237137098219707 | bayes_pls_golite062009 |
| fibroblast growth factor receptor activity | 0.0579877383828277 | bayes_pls_golite062009 |
