| Protein: | cdt-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 684 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cdt-1.
| Description | E-value | Query Range |
Subject Range |
|
|
323.0 | [0..2] | [680..752] |
|
Region A: Residues: [1-183] |
1 11 21 31 41 51
| | | | | |
1 MSSRVTRSRS QTPQTAVTDF FKTTRKPRAR GEKKIIDESI TKTTTIKEVQ IPAAPIVENK 60
61 SSRTRARTPS RQAELSSSGT PPKKAREAEA EAPELPKIHE DIILENPAPQ KSAIDKLMEA 120
121 SGPAKKKAGI RTVADLQARI AAKGAAKAIH EQNLKNKTKQ VDDHVELLKS PKKPVIVEHH 180
181 KSP
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [184-525] |
1 11 21 31 41 51
| | | | | |
1 QKSKAARNLF SPKKPVPDYI IPGFNVLKSA EKVRGEQDDA HEEEGKRMTA EFLKSSRLID 60
61 EVKESARQRI ELPTAYEHLA DTFKRIDQIT AIFIGQNRSC VVPELIKNVK NTSGKDFSNE 120
121 HLSQILHVYP QSYHIEMREQ RKAFGQGGKY ELEVRPNLVE DLRGYIYEKS PTDGDTEDLP 180
181 LVCPSKLLSP KKSPRKQVQP ALRKPEVDGR IRLDAARQRD RAHVFRYKLA SIVTKCHTEF 240
241 LESQGLCASS NIKRMHPLFR LDKHCPSLPQ VKLPEPPLQK SSIHIGMKEA LDKYMDQVSL 300
301 PSFVQKAYQD LKSPLKSTTG ASGTVPISPK KFSEMQKEQK SQ
|
| Detection Method: | |
| Confidence: | 10.69897 |
| Match: | 1wlqC |
| Description: | Strucure of Geminin-Cdt1 complex |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.835523092977445 | bayes_pls_golite062009 |
| transcription regulator activity | 0.4843036104266 | bayes_pls_golite062009 |
| nucleic acid binding | 0.37117756729668 | bayes_pls_golite062009 |
| DNA binding | 0.3118855114645 | bayes_pls_golite062009 |
|
Region A: Residues: [526-684] |
1 11 21 31 41 51
| | | | | |
1 GAMSLLERIR AKEAIKKAAE ACIDKDLERR KQRLTLLRDR YVRIVCNHYT AKRAQTMEID 60
61 VICKFVQFSS SNSSSIPDIM DHLRLLCEVA PMYISEASLM NKKYFRFTDN NIEAINELLD 120
121 EELQITQKKI DEQRNTQIAQ MSHHHTPRPS KAARSLKFH
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
