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View Structure Prediction Details

Protein: CE22128
Organism: Caenorhabditis elegans
Length: 326 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE22128.

Description E-value Query
Range
Subject
Range
gi|157104385, gi... - gi|157104385|ref|XP_001648384.1| diphosphomevalonate decarboxylase [Aedes aegypti], gi|108880368|gb|...
299.0 [0..2] [325..47]

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Predicted Domain #1
Region A:
Residues: [1-326]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQDDGAAEA EATVEINGKS VELSSNKRYQ TVFDEALRLQ RKRKEAEASS ADSNGNDPPP  60
   61 IFYHFHVTST TNFPVAAGLA SSAAGFAAIA LAIQRILRLD DSQANRLARI GSGSACRSMY 120
  121 GGLVHWRKGE MDDGSDCLAV RTEAAANWED LYCIILVFDD GRKKVGSSEG MRRSRETSQL 180
  181 LKHRIESIVP QRIQQIQEAY TSRNFEQLAR VIMADSNQFH AVCMDSTPPI RYLNEASWQL 240
  241 IDTVEEFNIG GIRAAYTFDA GPNACVIVQK ENASQFLKAV LQTIQVPSED LQVIGKELAE 300
  301 QFDVPAEPTT KCSKLIMSPM GGGPQE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 74.0
Match: 1fi4A
Description: Mevalonate 5-diphosphate decarboxylase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
diphosphomevalonate decarboxylase activity 2.34245588421319 bayes_pls_golite062009
catalytic activity 0.836142537655721 bayes_pls_golite062009
carbohydrate kinase activity 0.49664490095304 bayes_pls_golite062009
structural constituent of ribosome 0.325699575011026 bayes_pls_golite062009
binding 0.1299458402886 bayes_pls_golite062009
structural molecule activity 2.19428886088058E-4 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle