YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE21678
Organism: Caenorhabditis elegans
Length: 129 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE21678.

Description E-value Query
Range
Subject
Range
gi|11279039 - pir||H81089 HesB/YadR/YfhF family protein NMB1381 [imported] - Neisseria meningitidis (strain MC58 s...
gi|15677244, gi|... - gi|7226622|gb|AAF41749.1| HesB/YadR/YfhF family protein [Neisseria meningitidis MC58], gi|15677244|r...
167.0 [0..4] [129..1]

Back

Predicted Domain #1
Region A:
Residues: [1-129]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKFGGATAK VIKGALKVRQ TRAALTLTNE AVSRIRVLLA QQNDANALKI GVRQKGCNGL  60
   61 TYTLEYAKDK QKFDEEVEQD GIKVWIEPKA QLSLLGSEMD YVTDKLSSEF VFRNPNIKGT 120
  121 CGCGESFSI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 38.0
Match: 1s98A
Description: E.coli IscA crystal structure to 2.3 A
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
2 iron, 2 sulfur cluster binding 1.80248983815833 bayes_pls_golite062009
iron-sulfur cluster binding 1.47577968990921 bayes_pls_golite062009
metal cluster binding 1.47577968990921 bayes_pls_golite062009
binding 0.287940710403657 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle