YRC Public Data Repository - Protein Structure Prediction

Protein:	zyx-1
Organism:	Caenorhabditis elegans
Length:	176 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for zyx-1.

Description	E-value	Query Range	Subject Range
gi\|108876345, gi... - gi\|157116661\|ref\|XP_001652822.1\| lipoma preferred partner/lpp [Aedes aegypti], gi\|108876345\|gb\|EAT40...	182.0	[0..1]	[175..411]
gi\|55244081, gi\|... - gi\|58379957\|ref\|XP_310193.2\| ENSANGP00000011033 [Anopheles gambiae str. PEST], gi\|55244081\|gb\|EAA059...	179.0	[0..1]	[175..445]
LPP_CHICK - Lipoma-preferred partner homolog OS=Gallus gallus GN=LPP PE=2 SV=1	177.0	[0..1]	[175..425]
gi\|66522653 - gi\|66522653\|ref\|XP_391978.2\| PREDICTED: similar to CG11063-PB [Apis mellifera]	176.0	[0..1]	[170..689]
Zyx102EF-PA - The gene Zyx102EF is referred to in FlyBase by the symbol Dmel\Zyx102EF (CG32018, FBgn0011642). It i... gi\|220943012 - gi\|220943012\|gb\|ACL84049.1\| Zyx102EF-PA [synthetic construct]	175.0	[0..1]	[171..384]
gi\|62647139, gi\|... - gi\|62647139\|ref\|XP_216124.3\| PREDICTED: similar to zyxin [Rattus norvegicus], gi\|109473414\|ref\|XP_00...	175.0	[0..1]	[169..496]
zyx-1 - LIM domain containing proteins status:Confirmed UniProt:Q9U3F4 protein_id:CAB03095.2	175.0	[0..1]	[176..428]
gi\|47217571 - gi\|47217571\|emb\|CAG02498.1\| unnamed protein product [Tetraodon nigroviridis]	173.0	[0..1]	[175..923]
gi\|68383040 - gi\|68383040\|ref\|XP_692682.1\| PREDICTED: similar to Zyxin (Zyxin 2) [Danio rerio]	173.0	[0..1]	[168..375]

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Predicted Domain #1

Region A:
Residues: [1-176]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQIFHVDCF KCGQCSKTLA GASFYNIDDK PTCEGCYQNS LEKCTACNRA ISDKLLRACG  60
   61 GVYHVNCFVC FSCKKSLDGI PFTLDKDNNV HCVPCFHDKF APRCALCSKP IVPQDGEKES 120
  121 VRVVAMDKSF HVDCYKCEDC GMQLSSKLEG QGCYPIDNHL LCKTCNGNRL RVVSST

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.0
Match:	2dfyX
Description:	No description for 2dfyX was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits