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View Structure Prediction Details

Protein: CE20754
Organism: Caenorhabditis elegans
Length: 394 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE20754.

Description E-value Query
Range
Subject
Range
CE18401 - WBGene00012870 status:Partially_confirmed TR:O62467 protein_id:CAA16353.1
556.0 [0..1] [394..1]

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Predicted Domain #1
Region A:
Residues: [1-119]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEFESTENQ KPTMLASLDH LSLRNWASPF EEASTPPTSD DSFQSSSEDN LSLRNWAPLS  60
   61 PNPETEKSAK SLRNYSTNPL IPSYICDLCE SPKTSELRVA HDAPTFQTTY SYSISWDVE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [120-267]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDVEHYRNV METVSKSSAI SSRSSFGGAP SPVVVKCDGP CKKEFPSNLL STIGRCGHYL  60
   61 CTACFDIVKN ADGTYGCSSQ QCYWKGSSRQ ESKKYYEKDI CRKQRAKALG MKDLGIDVKP 120
  121 ASSASSNPIK ETSDSSSETN CSLSSGTV

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.02
Match: 1zbdB
Description: Effector domain of rabphilin-3a
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.30336743219728 bayes_pls_golite062009
protein binding 0.510953193035899 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [268-394]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFNHRMLNSL TPVAENSVAI MMVLVEPVEV YGIVHSYVKM SFPLNTNLAK ALGAMLHRKK  60
   61 KVLGDNVANG QLYFGFVNDD EKIGMRRIKS NYYDSLMVAE IPKFDDRVVL IFDVGDYVAR 120
  121 GFKIYLE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle