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View Structure Prediction Details

Protein: CE20754
Organism: Caenorhabditis elegans
Length: 394 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE20754.

Description E-value Query
Range
Subject
Range
CE18401 - WBGene00012870 status:Partially_confirmed TR:O62467 protein_id:CAA16353.1
556.0 [0..1] [394..1]

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Predicted Domain #1
Region A:
Residues: [1-119]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEFESTENQ KPTMLASLDH LSLRNWASPF EEASTPPTSD DSFQSSSEDN LSLRNWAPLS  60
   61 PNPETEKSAK SLRNYSTNPL IPSYICDLCE SPKTSELRVA HDAPTFQTTY SYSISWDVE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [120-267]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDVEHYRNV METVSKSSAI SSRSSFGGAP SPVVVKCDGP CKKEFPSNLL STIGRCGHYL  60
   61 CTACFDIVKN ADGTYGCSSQ QCYWKGSSRQ ESKKYYEKDI CRKQRAKALG MKDLGIDVKP 120
  121 ASSASSNPIK ETSDSSSETN CSLSSGTV

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.02
Match: 1zbdB
Description: Effector domain of rabphilin-3a
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.30336743219728 bayes_pls_golite062009
protein binding 0.510953193035899 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [268-394]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFNHRMLNSL TPVAENSVAI MMVLVEPVEV YGIVHSYVKM SFPLNTNLAK ALGAMLHRKK  60
   61 KVLGDNVANG QLYFGFVNDD EKIGMRRIKS NYYDSLMVAE IPKFDDRVVL IFDVGDYVAR 120
  121 GFKIYLE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle