YRC Public Data Repository - Protein Structure Prediction

Protein:	CE20718
Organism:	Caenorhabditis elegans
Length:	233 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE20718.

Description	E-value	Query Range	Subject Range
gi\|20977030 - gi\|20977030\|gb\|AAM33248.1\| mitotic phosphoprotein 67 [Xenopus laevis]	226.0	[0..4]	[220..194]
TIPIN_MOUSE - TIMELESS-interacting protein OS=Mus musculus GN=Tipin PE=1 SV=2	218.0	[0..18]	[203..31]
TIPIN_RAT - TIMELESS-interacting protein OS=Rattus norvegicus GN=Tipin PE=2 SV=1	218.0	[0..18]	[203..31]
gi\|106879191, gi... - gi\|30678682\|ref\|NP_186931.2\| zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana], gi\|2645...	215.0	[0..19]	[221..41]
TIPIN_CAEBR - Protein TIPIN homolog OS=Caenorhabditis briggsae GN=CBG03985 PE=3 SV=1 gi\|157746051 - gi\|157746051\|ref\|XP_001668122.1\| Hypothetical protein CBG03985 [Caenorhabditis briggsae AF16]	210.0	[0..1]	[233..1]
gi\|109081570 - gi\|109081570\|ref\|XP_001110143.1\| PREDICTED: similar to timeless-interacting protein [Macaca mulatta]	210.0	[0..14]	[203..31]
HGNC:30750\|MIM:6... - interacting protein gi\|117645640 - gi\|117645640\|emb\|CAL38286.1\| hypothetical protein [synthetic construct] TIPIN - TIMELESS interacting protein	209.0	[0..14]	[203..31]

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Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEMEDFFEN DELDREPSPM GDEAIEDNSG EGGTRRVVEP KLLRTKRLAN PRLALNERIL  60
   61 TGPKGISALR ETLKDFKPNP KDDPYANLEK LMKKYAYWGH LMFPKMKTED VLNRVETLGT 120
  121 RRQVKVFMIK HRLGETGEDS EHEEQENQKN GIIDD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	40.60206
Match:	PF07962.3
Description:	No description for PF07962.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [156-233]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GASDNDDDLF KDLPEKEVTT EKAKNSEKSD QKTAEIDENV EEEYRMMEEE RLREEQEAKE  60
   61 AADEDALMED FGDMNNDW

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits