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View Structure Prediction Details

Protein: crn-7
Organism: Caenorhabditis elegans
Length: 367 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for crn-7.

Description E-value Query
Range
Subject
Range
gi|39594067, gi|... - gi|39594067|emb|CAE70177.1| Hypothetical protein CBG16650 [Caenorhabditis briggsae], gi|187026426|em...
gi|157774937 - gi|157774937|ref|XP_001665534.1| hypothetical protein CBG16650 [Caenorhabditis briggsae AF16]
446.0 [0..2] [365..3]

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Predicted Domain #1
Region A:
Residues: [1-178]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLYFVLIFS VIFTTGNGKI QCKNMRGKSV DWFVVYKLPK LSGAGTSGKE FVYFDAESSD  60
   61 WTRGNDINDP NVAVGATVSQ VYSADKSNNF WFMYSDDDPI KSADSYRGHA KGVSLFDSTT 120
  121 GFWLIHSVPN FPPIKSFSYP NTAEKYGQSF FCASMEVQHL TELAEHWKYI QATPYIIN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [179-367]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPEKYATRFP TLKNVEAKQS LPRSATQFWI SKPIKTVQGV TLMAYAKHKK FDGDIWNDLI  60
   61 SRQNKVTLAV ESWLNGSGDD IHTTCTSTSQ THDVTEMRVT GLNFASSKDH SKWAVSNSQT 120
  121 NPIVCFGDMN RQKSQLKRGG GALCIQNRNL WQLYHSFVIQ VEPCKSSSHF SMFQTIATLL 180
  181 SAAGLVSKI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle