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View Structure Prediction Details

Protein: crn-7
Organism: Caenorhabditis elegans
Length: 367 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for crn-7.

Description E-value Query
Range
Subject
Range
gi|39594067, gi|... - gi|39594067|emb|CAE70177.1| Hypothetical protein CBG16650 [Caenorhabditis briggsae], gi|187026426|em...
gi|157774937 - gi|157774937|ref|XP_001665534.1| hypothetical protein CBG16650 [Caenorhabditis briggsae AF16]
446.0 [0..2] [365..3]

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Predicted Domain #1
Region A:
Residues: [1-178]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLYFVLIFS VIFTTGNGKI QCKNMRGKSV DWFVVYKLPK LSGAGTSGKE FVYFDAESSD  60
   61 WTRGNDINDP NVAVGATVSQ VYSADKSNNF WFMYSDDDPI KSADSYRGHA KGVSLFDSTT 120
  121 GFWLIHSVPN FPPIKSFSYP NTAEKYGQSF FCASMEVQHL TELAEHWKYI QATPYIIN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.414 N/A N/A a.1.1 Globin-like
View Download 0.312 N/A N/A c.52.1 Restriction endonuclease-like

Predicted Domain #2
Region A:
Residues: [179-367]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPEKYATRFP TLKNVEAKQS LPRSATQFWI SKPIKTVQGV TLMAYAKHKK FDGDIWNDLI  60
   61 SRQNKVTLAV ESWLNGSGDD IHTTCTSTSQ THDVTEMRVT GLNFASSKDH SKWAVSNSQT 120
  121 NPIVCFGDMN RQKSQLKRGG GALCIQNRNL WQLYHSFVIQ VEPCKSSSHF SMFQTIATLL 180
  181 SAAGLVSKI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle