YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: cco-2
Organism: Caenorhabditis elegans
Length: 174 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cco-2.

Description E-value Query
Range		 Subject
Range
gi|157772799 - gi|157772799|ref|XP_001664464.1| hypothetical protein CBG15765 [Caenorhabditis briggsae AF16]
gi|187027031, gi... - gi|39588923|emb|CAE69553.1| Hypothetical protein CBG15765 [Caenorhabditis briggsae], gi|187027031|em...
 300.0 [0..1] [173..1]
COX5A_RAT - Cytochrome c oxidase subunit 5A, mitochondrial OS=Rattus norvegicus GN=Cox5a PE=1 SV=1
 225.0 [0..13] [144..17]
COX5A_MOUSE, COX... - (P12787) Cytochrome c oxidase polypeptide Va, mitochondrial precursor (EC 1.9.3.1), Cytochrome c oxi...
 225.0 [0..2] [144..4]
COX5A_BOVIN - Cytochrome c oxidase subunit 5A, mitochondrial OS=Bos taurus GN=COX5A PE=1 SV=2
 223.0 [0..2] [144..4]
gi|123993817 - gi|123993817|gb|ABM84510.1| cytochrome c oxidase subunit Va [synthetic construct]
COX5A - cytochrome c oxidase subunit Va
 223.0 [0..2] [144..4]
COX5A_PANTR - Cytochrome c oxidase subunit 5A, mitochondrial OS=Pan troglodytes GN=COX5A PE=2 SV=1
 222.0 [0..2] [144..4]
gi|61358189, gi|... - gi|61358189|gb|AAX41522.1| cytochrome c oxidase subunit Va [synthetic construct], gi|60815694|gb|AAX...
 221.0 [0..2] [144..4]
COX5A_MACMU - Cytochrome c oxidase subunit 5A, mitochondrial OS=Macaca mulatta GN=COX5A PE=2 SV=1
 220.0 [0..2] [144..4]
COX5A_SAISC - Cytochrome c oxidase subunit 5A, mitochondrial OS=Saimiri sciureus GN=COX5A PE=2 SV=1
 218.0 [0..2] [144..4]

Back

Predicted Domain #1
Region A:
Residues: [1-174] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLTRAVTR LAIAGRQAVR TIATTTPVSG HGDDIMEKWP ADKFDNHFIN YLNRPEIDGW  60
   61 EVRKALSELH DYDVIPDPKV VEAALRACRR VNDFALAVRF LEAIKIKCGA QKNRDTVYAY 120
  121 IVKQVEPVLK ELGIDTPEQL GYGEPEFFVP EPEYWWEKKW YKDYGYDKHP NIQI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 53.0
Match: 1occE
Description: Cytochrome c oxidase subunit E
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
cytochrome-c oxidase activity 13.5907467824992 bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors 13.5907467824992 bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor 13.5907467824992 bayes_pls_golite062009
heme-copper terminal oxidase activity 13.2768834037467 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 7.11269745957917 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 6.95782581983891 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 6.3444074949287 bayes_pls_golite062009
cation transmembrane transporter activity 6.0779545597528 bayes_pls_golite062009
oxidoreductase activity 6.07124287051458 bayes_pls_golite062009
ion transmembrane transporter activity 5.87041225771312 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 5.44223516926039 bayes_pls_golite062009
substrate-specific transporter activity 5.2274118132466 bayes_pls_golite062009
electron carrier activity 1.73787331766336 bayes_pls_golite062009
catalytic activity 1.17990683373825 bayes_pls_golite062009
transporter activity 0.0449232084165001 bayes_pls_golite062009
transmembrane transporter activity 0.0241192035901199 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle