| Protein: | pap-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 655 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pap-1.
| Description | E-value | Query Range |
Subject Range |
|
|
619.0 | [0..2] | [654..83] |
|
Region A: Residues: [1-513] |
1 11 21 31 41 51
| | | | | |
1 MSATEKDKTP LLGVSQPISL AHPDSKDIAQ TTLLIETLKK FGSYEPKEET EQRMEVLRNL 60
61 NRLVKEWVKN VTAMKIPNGE GVNAGGKLFT FGSYRLGVHS SGADIDTLAV VPRHIDRSDF 120
121 FTSFKEMLNN DPNVTELHGV EEAFVPVMKL KYSGVELDIL FARLALKEVP DTQELSDDNL 180
181 LRNLDQESVR SLNGCRVAEQ LLKLVPRQKE FCVTLRAIKL WAKNHGIYSN SMGFFGGITW 240
241 AILVARACQL YPNASPSRLV HRMFFIFSTW TWPHPVVLNE MNNDRNDIPT LCELVWDPRR 300
301 KNTDRFHVMP IITPAFPEQN STHNVTRSTA TVIKNEICEA LEICRDISEG KSKWTALFEE 360
361 VNFFSRYKHF IALIMAAPNE EEELNYGGFL ESRIRLLVQS LERNQDIIIA HNDPNKHKPS 420
421 PNAKFDVNPE NKRVTVWFIG LEFAEHAKTL DLTNEIQRFK TNVELQASNV KGIGPNCQVQ 480
481 IDMFYVKRNS LIQVISAADL RRGRRWKKVV PIA
|
| Detection Method: |  |
| Confidence: | 166.0 |
| Match: | 1f5aA |
| Description: | Poly(A) polymerase, middle domain; Poly(A) polymerase N-terminal, catalytic domain; Poly(A) polymerase, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| catalytic activity | 1.122769147009 | bayes_pls_golite062009 |
| RNA binding | 1.07207584601969 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 0.92178707322923 | bayes_pls_golite062009 |
| polynucleotide adenylyltransferase activity | 0.911825870004661 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.667889614569279 | bayes_pls_golite062009 |
| transferase activity | 0.63270331673446 | bayes_pls_golite062009 |
|
Region A: Residues: [514-655] |
1 11 21 31 41 51
| | | | | |
1 TNTSVSSSTP RSVVRTTSTS SVPTTPTGLA APKTPLSASV SATNEPDSTT NGTPLSRKRS 60
61 MDEESSTTVT SQISDESVPK KKTRDDTLEE NRVSMVVEVS NVVVEQRTKV VQEIVDLQAD 120
121 NGLNTSNGLE ASEQKMEVPQ SV
|
| Detection Method: | |
| Confidence: | 1.51 |
| Match: | 2j63A |
| Description: | No description for 2j63A was found. |
