| Protein: | nhr-85 |
| Organism: | Caenorhabditis elegans |
| Length: | 336 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-85.
| Description | E-value | Query Range |
Subject Range |
|
|
220.0 | [0..1] | [248..339] |
|
Region A: Residues: [1-336] |
1 11 21 31 41 51
| | | | | |
1 MSRDAVRFGR VPKREKARMF EEMQKTNVQS QRDQIAIQYE NLTEVMHKIN QAFGTLQATL 60
61 EKCTGPIYTD RCPITSNFIV IPLKAAIDFA NSIPAFLSIT QTQRVHLLQN SVFDVMLLAS 120
121 ASASTSQHFP PGGLTYDQSS ANPIIPQAIQ SISARIRQLP PQTVPILTAI AVCQADLLPE 180
181 SQQPMLLAER LWCVLGKLGG IQSLATAPSL LADVRTLRQW HSDRLRQMSQ ISQHFSQNLL 240
241 IAPVAAAAPV LLPPAFLSPP ASATSTSSSS VKSEFIERHP SIASLLERPR RISSSGAQEP 300
301 LNLSLPHVRH QVKRDVDSDE QLEEMKVSPV PTTLSE
|
| Detection Method: |  |
| Confidence: | 47.69897 |
| Match: | 1xdkB |
| Description: | Crystal Structure of the RARbeta/RXRalpha Ligand Binding Domain Heterodimer in Complex with 9-cis Retinoic Acid and a Fragment of the TRAP220 Coactivator |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.15996699473685 | bayes_pls_golite062009 |
| transcription regulator activity | 0.46162010671465 | bayes_pls_golite062009 |
| protein binding | 0.33427459029264 | bayes_pls_golite062009 |
| nucleic acid binding | 0.15459949087509 | bayes_pls_golite062009 |
| DNA binding | 0.14395376162921 | bayes_pls_golite062009 |
