| Protein: | hmp-2 |
| Organism: | Caenorhabditis elegans |
| Length: | 678 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hmp-2.
| Description | E-value | Query Range |
Subject Range |
|
|
389.0 | [0..5] | [677..75] |
|
Region A: Residues: [1-67] |
1 11 21 31 41 51
| | | | | |
1 MLLHSTNSYS IFTDHEVETR TSRIRSAMFP DWIPPTSAAE ATNSTTSIVE MMQMPTQQLK 60
61 QSVMDLL
|
| Detection Method: |  |
| Confidence: | 6.0 |
| Match: | 1lrvA |
| Description: | A LEUCINE-RICH REPEAT VARIANT WITH A NOVEL REPETITIVE PROTEIN STRUCTURAL MOTIF |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [68-609] |
1 11 21 31 41 51
| | | | | |
1 TYEGSNDMSG LSLPDLVKLM CDHDESVVAR AVHRAYMLSR EDPNFFNAPG FDHRSFVEAL 60
61 MAASKSSNVN VRRNAIGALS HMSEQRGGPL LIFRSGGLAE IIRMLYDSLE SVVHYAVTTL 120
121 RNLLMHVSDS RAQARALNAV EALTPHLHKT NPKLLAQVAD GLYFLLIDDA PSKITFLSLL 180
181 GPQILVSILR EYSDHRKLIY TVVRCIRSLS VCPSNKPALI SLGCLPALYV ELCTAKDERS 240
241 QTAILVAMRN LSDSATNEEN LTQLIIKLLE IIRVANDGMT ACACGTLSNL TCNNTRNKQT 300
301 VCSHGGIDAL VTAIRRLPEV EEVTEPALCA LRHCTARHSL AEEAQSELRF CQAFPVILDQ 360
361 LETLRTPVIK AALGVIRNSA LLQTNLIELT QEQTANGHTA VSLTMDILRR AITAIEENPD 420
421 IAVDGVPMWG VIEGAVSALH QLANHPAVAA ACCDDIGQVG NPECPPFLDL LHRLLAHPRL 480
481 GSMDDEVLER EILGLLYQLS KRPDGARAVE STGVSALLME SRGSQYKSVV TYANGVLSNL 540
541 KR
|
| Detection Method: | |
| Confidence: | 86.30103 |
| Match: | 1jpwA |
| Description: | beta-Catenin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.52869107451293 | bayes_pls_golite062009 |
| protein transporter activity | 1.46178231098581 | bayes_pls_golite062009 |
| protein binding | 0.91858015757355 | bayes_pls_golite062009 |
| transporter activity | 0.53053318170156 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.11990405994399 | bayes_pls_golite062009 |
|
Region A: Residues: [610-678] |
1 11 21 31 41 51
| | | | | |
1 GDSAAIMNMS NSYDYEMSGS AADWQRDGLE RELFAEMYPT NDGGHSESIN MALNNSQMRP 60
61 NHNWYDTDL
|
| Detection Method: | |
| Confidence: | 18.69897 |
| Match: | 1gcjA |
| Description: | Importin beta |
Matching Structure (courtesy of the PDB): |
|
