YRC Public Data Repository - Protein Structure Prediction

Protein:	spt-4
Organism:	Caenorhabditis elegans
Length:	120 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for spt-4.

Description	E-value	Query Range	Subject Range
gi\|50758014 - gi\|50758014\|ref\|XP_415718.1\| PREDICTED: similar to hypothetical protein FLJ20315 [Gallus gallus]	200.0	[0..4]	[111..2122]
gi\|157772861 - gi\|157772861\|ref\|XP_001664495.1\| hypothetical protein CBG00462 [Caenorhabditis briggsae AF16] SPT4H_CAEBR - Transcription elongation factor SPT4 OS=Caenorhabditis briggsae GN=spt-4 PE=3 SV=1	198.0	[0..1]	[120..1]
SPT4H_DANRE - Transcription elongation factor SPT4 OS=Danio rerio GN=supt4h1 PE=3 SV=1	196.0	[0..4]	[111..5]
gi\|47223757 - gi\|47223757\|emb\|CAF98527.1\| unnamed protein product [Tetraodon nigroviridis]	195.0	[0..4]	[111..5]
SPT4H_MACFA - Transcription elongation factor SPT4 OS=Macaca fascicularis GN=SUPT4H1 PE=3 SV=1 gi\|167773609 - gi\|167773609\|gb\|ABZ92239.1\| suppressor of Ty 4 homolog 1 (S. cerevisiae) [synthetic construct] tr\|G1U0W2\|G1U0W2... - pep:novel chromosome:oryCun2:19:29917532:29924222:1 gene:ENSOCUG00000025823 transcript:ENSOCUT000000... ENSCJAT00000033815 - null SUPT4H1 - suppressor of Ty 4 homolog 1 (S. cerevisiae) gi\|73966584 - gi\|73966584\|ref\|XP_853156.1\| PREDICTED: similar to Transcription initiation protein SPT4 homolog 1 i... gi\|205361137, gi... - gi\|62656744\|ref\|XP_213415.3\| PREDICTED: similar to Transcription elongation factor SPT4 1 (DRB sensi... SPT4H_BOVIN - Transcription elongation factor SPT4 OS=Bos taurus GN=SUPT4H1 PE=3 SV=1 gi\|109114496 - gi\|109114496\|ref\|XP_001106749.1\| PREDICTED: similar to Transcription elongation factor SPT4 1 (DRB s... gi\|114669547, gi... - gi\|114669549\|ref\|XP_001172699.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes], gi\|114... SPT4A_MOUSE - Transcription elongation factor SPT4-A OS=Mus musculus GN=Supt4h1a PE=2 SV=1 gi\|149723988 - gi\|149723988\|ref\|XP_001503750.1\| PREDICTED: similar to suppressor of Ty 4 homolog 1 [Equus caballus]	195.0	[0..4]	[111..5]
SPT4H_PONPY - Transcription elongation factor SPT4 - Pongo pygmaeus (Orangutan) SPT4H_PONAB - Transcription elongation factor SPT4 OS=Pongo abelii GN=SUPT4H1 PE=3 SV=1	195.0	[0..4]	[111..5]
SPT4H_XENLA - Transcription elongation factor SPT4 OS=Xenopus laevis GN=supt4h1 PE=3 SV=1	194.0	[0..4]	[111..5]
gi\|29841363 - gi\|29841363\|gb\|AAP06395.1\| similar to GenBank Accession Number BC002802 suppressor of Ty [Schistosom...	194.0	[0..1]	[114..3]
gi\|62859879 - gi\|62859879\|ref\|NP_001016679.1\| suppressor of Ty 4 homolog 1 [Xenopus (Silurana) tropicalis]	194.0	[0..4]	[111..5]
gi\|74204382 - gi\|74204382\|dbj\|BAE39944.1\| unnamed protein product [Mus musculus]	194.0	[0..4]	[111..5]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASVPADLR NLRACLLCSL VKSVESFQKE GCENCEDVLH LKGDEEKVYD CTSANYDGMI  60
   61 AAMSNNESWV CKWQKMQRKV KGMYAISVSG VLPNNIVSEL KSLGVRYKPN QRDYSTQFKK 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.522879
Match:	2exuA
Description:	No description for 2exuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits