YRC Public Data Repository - Protein Structure Prediction

Protein:	CE19366
Organism:	Caenorhabditis elegans
Length:	236 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE19366.

Description	E-value	Query Range	Subject Range
gi\|60360602 - gi\|60360602\|dbj\|BAD90319.1\| mKIAA4210 protein [Mus musculus]	171.0	[0..1]	[234..105]
gi\|194210312 - gi\|194210312\|ref\|XP_001493064.2\| PREDICTED: kelch-like 20 (Drosophila) [Equus caballus] KLHL20 - kelch-like 20 (Drosophila) KLH20_RAT - Kelch-like protein 20 OS=Rattus norvegicus GN=Klhl20 PE=3 SV=1 gi\|73960600 - gi\|73960600\|ref\|XP_537188.2\| PREDICTED: similar to kelch-like 20 isoform 1 [Canis familiaris] gi\|114565500, gi... - gi\|114565500\|ref\|XP_514005.2\| PREDICTED: kelch-like 20 isoform 3 [Pan troglodytes], gi\|114565498\|ref... KLH20_BOVIN - Kelch-like protein 20 OS=Bos taurus GN=KLHL20 PE=2 SV=3 ENSCJAT00000018058 - null	171.0	[0..1]	[234..67]
KLH20_PONAB - Kelch-like protein 20 OS=Pongo abelii GN=KLHL20 PE=2 SV=3 gi\|55731256 - gi\|55731256\|emb\|CAH92342.1\| hypothetical protein [Pongo abelii]	171.0	[0..1]	[234..67]
KLH20_XENLA - Kelch-like protein 20 OS=Xenopus laevis GN=klhl20 PE=2 SV=1	170.0	[0..1]	[234..62]
gi\|114565496 - gi\|114565496\|ref\|XP_001149345.1\| PREDICTED: similar to mKIAA4210 protein isoform 1 [Pan troglodytes]	169.0	[0..1]	[234..142]
gi\|73960608 - gi\|73960608\|ref\|XP_861800.1\| PREDICTED: similar to kelch-like 20 isoform 5 [Canis familiaris] gi\|119611360 - gi\|119611360\|gb\|EAW90954.1\| kelch-like 20 (Drosophila), isoform CRA_c [Homo sapiens]	169.0	[0..1]	[234..67]
KLHDB_DROYA - Kelch-like protein diablo OS=Drosophila yakuba GN=dbo PE=3 SV=1 KLHDB_DROSE - Kelch-like protein diablo OS=Drosophila sechellia GN=dbo PE=3 SV=1 dbo-PA - The gene diablo is referred to in FlyBase by the symbol Dmel\dbo (CG6224, FBgn0040230). It is a prot...	168.0	[0..1]	[232..71]

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Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCSPANIMML NIGGTVFHTS KATLTGINGF FKMLLESDIP LHKDESNCIF IDRSPKHFDV  60
   61 ILNFLRDGDV DLPELEKEVK EVRREAQFYL LDGLVYLCNW KLNTAIHVLK NDTEKLEFQR 120
  121 KNDKPRLLIK YGDINDVVEY WRLRFNIPEI LEKYG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.522879
Match:	2a79B
Description:	Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [156-236]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKLHIAFHPY EEFTGFVDEF LAEIVADSRD NEDDSANSEG DSLISLNKHY ICSLSVFKHG  60
   61 SFVTLEKLMV LLGFNGGVDR K

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.813	N/A	N/A	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits