YRC Public Data Repository - Protein Structure Prediction

Protein:	CE19366
Organism:	Caenorhabditis elegans
Length:	236 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE19366.

Description	E-value	Query Range	Subject Range
gi\|60360602 - gi\|60360602\|dbj\|BAD90319.1\| mKIAA4210 protein [Mus musculus]	171.0	[0..1]	[234..105]
gi\|194210312 - gi\|194210312\|ref\|XP_001493064.2\| PREDICTED: kelch-like 20 (Drosophila) [Equus caballus] KLHL20 - kelch-like 20 (Drosophila) KLH20_RAT - Kelch-like protein 20 OS=Rattus norvegicus GN=Klhl20 PE=3 SV=1 gi\|73960600 - gi\|73960600\|ref\|XP_537188.2\| PREDICTED: similar to kelch-like 20 isoform 1 [Canis familiaris] gi\|114565500, gi... - gi\|114565500\|ref\|XP_514005.2\| PREDICTED: kelch-like 20 isoform 3 [Pan troglodytes], gi\|114565498\|ref... KLH20_BOVIN - Kelch-like protein 20 OS=Bos taurus GN=KLHL20 PE=2 SV=3 ENSCJAT00000018058 - null	171.0	[0..1]	[234..67]
KLH20_PONAB - Kelch-like protein 20 OS=Pongo abelii GN=KLHL20 PE=2 SV=3 gi\|55731256 - gi\|55731256\|emb\|CAH92342.1\| hypothetical protein [Pongo abelii]	171.0	[0..1]	[234..67]
KLH20_XENLA - Kelch-like protein 20 OS=Xenopus laevis GN=klhl20 PE=2 SV=1	170.0	[0..1]	[234..62]
gi\|114565496 - gi\|114565496\|ref\|XP_001149345.1\| PREDICTED: similar to mKIAA4210 protein isoform 1 [Pan troglodytes]	169.0	[0..1]	[234..142]
gi\|73960608 - gi\|73960608\|ref\|XP_861800.1\| PREDICTED: similar to kelch-like 20 isoform 5 [Canis familiaris] gi\|119611360 - gi\|119611360\|gb\|EAW90954.1\| kelch-like 20 (Drosophila), isoform CRA_c [Homo sapiens]	169.0	[0..1]	[234..67]
KLHDB_DROYA - Kelch-like protein diablo OS=Drosophila yakuba GN=dbo PE=3 SV=1 KLHDB_DROSE - Kelch-like protein diablo OS=Drosophila sechellia GN=dbo PE=3 SV=1 dbo-PA - The gene diablo is referred to in FlyBase by the symbol Dmel\dbo (CG6224, FBgn0040230). It is a prot...	168.0	[0..1]	[232..71]

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Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCSPANIMML NIGGTVFHTS KATLTGINGF FKMLLESDIP LHKDESNCIF IDRSPKHFDV  60
   61 ILNFLRDGDV DLPELEKEVK EVRREAQFYL LDGLVYLCNW KLNTAIHVLK NDTEKLEFQR 120
  121 KNDKPRLLIK YGDINDVVEY WRLRFNIPEI LEKYG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.522879
Match:	2a79B
Description:	Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [156-236]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKLHIAFHPY EEFTGFVDEF LAEIVADSRD NEDDSANSEG DSLISLNKHY ICSLSVFKHG  60
   61 SFVTLEKLMV LLGFNGGVDR K

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.813	N/A	N/A	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.803	N/A	N/A	a.24.13	Domain of the SRP/SRP receptor G-proteins
View	Download	0.788	N/A	N/A	a.24.3	Cytochromes
View	Download	0.539	N/A	N/A	a.28.3	Retrovirus capsid protein C-terminal domain
View	Download	0.531	N/A	N/A	a.130.1	Chorismate mutase II

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits