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View Structure Prediction Details

Protein: CE18880
Organism: Caenorhabditis elegans
Length: 340 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE18880.

Description E-value Query
Range
Subject
Range
gi|187024633, gi... - gi|39594716|emb|CAE72295.1| Hypothetical protein CBG19425 [Caenorhabditis briggsae], gi|187024633|em...
gi|157764824 - gi|157764824|ref|XP_001674755.1| Hypothetical protein CBG19425 [Caenorhabditis briggsae AF16]
546.0 [0..1] [340..1]

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Predicted Domain #1
Region A:
Residues: [1-124]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSLIGTHSG KFHCDEAFAC FMLKQLPQFK DHSILRTRDA AQLEKCDIIV DVGGIFDHSK  60
   61 QRYDHHQRGF TDTMRTLEKL NFDTKLSSAG LVYAHYGREV INQILGGNVS SSMIDLFYHR 120
  121 LYEQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [125-226]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FVESIDAIDN GISQYDGVPR YHSSGNLSSR TGQFNSHWNE PENDADERFQ QAMQFIGEEF  60
   61 SRSVKYLANV WWPAREIIEA AVDKRFEIDA SGRIILIENG GC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [227-340]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PWKEHFFDIE VEKNIADDNI TYILFSDSTN ASWRVQAIPV DKMSSFENRM PLPAAWRGLR  60
   61 DDDLSKESGI PGGVFVHISG FIGGNLTREG AIAMARKALE IGEENPVKKA KLGN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle