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View Structure Prediction Details

Protein: tag-131
Organism: Caenorhabditis elegans
Length: 326 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tag-131.

Description E-value Query
Range
Subject
Range
NEUFC_CAEBR - Neuferricin homolog OS=Caenorhabditis briggsae GN=tag-131 PE=3 SV=1
gi|157775333 - gi|157775333|ref|XP_001665732.1| hypothetical protein CBG18095 [Caenorhabditis briggsae AF16]
410.0 [0..1] [326..1]

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Predicted Domain #1
Region A:
Residues: [1-97]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKNRRRTDD AGLMTKTLAG IAALVFFLSF ICSSYDITVT HVISTIDVIL EESEYYRSAK  60
   61 EWTASSIDAT WNEVSIPSRK AEHIQAINPE VDVAAGG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [98-211]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KHVFTPEQLH FFDGTRDSKP IYLAILGRVY NVDGKKEYYG PGKSYHHFAG RDATRAFTTG  60
   61 DFQESGLIAT THGLSHDELL SIRDWVSFYD KEYPLVGVVA DLYYDSEGQP TPEL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.69897
Match: 1t0gA
Description: Hypothetical protein At2g24940.1 from Arabidopsis thaliana has a cytochrome b5 like fold
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [212-326]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDVLARVEKA NEYRKAQAVE IEVFPPCNSE YNQNGGRVWC STKSGGVERQ WAGVPRKLIE  60
   61 PTTEKFRCAC VKNFGPGVSG AEEVKSSSNR GDLDHPDLEL FPDCSPTSNS CKIVS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle