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View Structure Prediction Details

Protein: CE18484
Organism: Caenorhabditis elegans
Length: 294 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE18484.

Description E-value Query
Range
Subject
Range
lpd-6 - status:Confirmed UniProt:O44991 protein_id:AAB97575.2
130.0 [0..50] [113..358]
gi|39595512, gi|... - gi|39595512|emb|CAE60550.1| Hypothetical protein CBG04177 [Caenorhabditis briggsae], gi|187036329|em...
gi|157746351 - gi|157746351|ref|XP_001668271.1| Hypothetical protein CBG04177 [Caenorhabditis briggsae AF16]
125.0 [0..50] [113..358]

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Predicted Domain #1
Region A:
Residues: [1-120]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFDGEIYIP LTLAQTNIFW VGPVKQDIDV LNQFQRTNQL NDDEMGRTWK AEVQEQRVIR  60
   61 GRTLVKGQQD AEEAEVKAIR ENATRKQPAT TEQVEEVENQ KEKDREIVMN RERIFSLVHR 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [121-294]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NITRYSIQMP AQKGVQALVS KFRLSPGNPM FLKSSSDLFS FTSSDKEYLE GYEIKVKSAA  60
   61 GVIKFTLLKG DQPPKYEISS FLGIILEHRE DPSNTPMPPS SSRRHAVDNG KGEEAKSVTN 120
  121 DTVFARIQDY FGKQMHVGSY GSTFKPSKIE INETNVKKGQ VYGIYLVSNT TSSV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle