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View Structure Prediction Details

Protein: CE18401
Organism: Caenorhabditis elegans
Length: 413 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE18401.

Description E-value Query
Range
Subject
Range
CE20754 - status:Partially_confirmed UniProt:Q20112 protein_id:CAA84663.1
565.0 [0..1] [413..1]

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Predicted Domain #1
Region A:
Residues: [1-188]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEFESTEDQ KPTMLASLDH LSLRNWASPF EEASTPPTAS DDSFQSSSED NLSLRNWAPL  60
   61 SPNPETVKSA KSLRNYSTNP LIPSYICDLC ESPKTSELRV AYDAATFQTT YSYSIIWDVE 120
  121 MNDVEHYRKV METVSKSSAN SSRSSFGYFF EARPGMCRLL RTLHNYATDT SQASLADYMI 180
  181 ELSGRAPS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [189-312]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVVVKCGHYL CTACFDIVKN ADGTYGCSSQ QCYWKGSSRQ ESKKNYENDI CRKQRAKALG  60
   61 MKDLGIDVKP ASSASSNPIK ETSDSSSETN CSLSSGPVSF NHTMLNSLTP VAEHSVAIMM 120
  121 VLVE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [313-413]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLEVYGIVHS YVEMSFPLDT NLAKALGVML HRKKKILGDY VANGKLYFGF VNDDEKIGMR  60
   61 RIKSNYYDSL MVAEIPKFDD RVVLIFDVGD YVARGFKIYL K

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle