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View Structure Prediction Details

Protein: CE18209
Organism: Caenorhabditis elegans
Length: 476 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE18209.

Description E-value Query
Range
Subject
Range
CE27361 - status:Partially_confirmed UniProt:O44671 protein_id:AAB94265.2
374.0 [0..5] [476..18]

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Predicted Domain #1
Region A:
Residues: [1-92]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSNNASLGV FVLFCILFVY IFSRNSFDDQ DQYEKVYIQL PFPEASTLST KRPTTSKSAV  60
   61 ITTQERDSTE TVPNALSPSK EEVQDTAEDE VV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [93-223]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGEPALAYFR KLSGSVNGFS SAGGLKFQIM AAYSYKDHFS ATISVPKQIG SVAYCRYIGV  60
   61 DGKEVAEPVE SRVYPFFVVY CSRRSNATML GITNSKNEPI STENSAKLIH RKFKEYQHNV 120
  121 SFCLAPIYGK E

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [224-386]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKWLHFAELV EHYKLQGVNK FFIYIREIGE YDMKLVKSYV ASGEVEIIEV PATNSDVIAQ  60
   61 QMMAVADCLL RSRTYSKWSI YADIDERLIM TDDRMTINGF LRNVTDESIG SIAFPQRWIM 120
  121 KREQIPPKFT SDAQIIEKMP TRAWHETTSA AMKGHPVCKD QVS

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.37
Match: 1h7lA
Description: Spore coat polysaccharide biosynthesis protein SpsA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transferase activity 0.117862115002202 bayes_pls_golite062009
catalytic activity 0.075405962065044 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.00643109218840909 bayes_pls_golite062009

Predicted Domain #4
Region A:
Residues: [387-476]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CWAKDIVHNE KAIRMLVHEV VKFYPGYREW FLDSSIGYIR HYRDVDMQSW EKNNIANLMK  60
   61 FGPFSNTSYP NSLGAKLLKN VLSRLHWVYN 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle