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View Structure Prediction Details

Protein: CE18025
Organism: Caenorhabditis elegans
Length: 409 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE18025.

Description E-value Query
Range
Subject
Range
CE11364 - WBGene00010241 status:Partially_confirmed TR:Q9XVM2 protein_id:CAB03147.1
415.0 [0..1] [354..283]

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Predicted Domain #1
Region A:
Residues: [1-55]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAGSWKTLL YLKGKTQGIK LCIDPEHFLD DKRAPICKEK FELYIMPRNG LVIWP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [56-245]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSGRASMMEL KPRAIADAEI YVIEVGFGYG DKVNGKLPGE VCTKFMSNSF LKYPGLSVES  60
   61 ALSEMSNRNF WPKFSESKTF FLSLKKKQIS LNTAFFFYVA NMFREVVVSD SEWWDATAAS 120
  121 KVAFFFEKSD DLKENKGIIS QNIEIGKTFI SKKDVGKVHK IDGEGESGDE TGEGKEKLLA 180
  181 PPPPKIEPNI 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [246-409]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTTTVPPVRY INNPDYQTGS NEEENPNTYT PGKWWAWGLF VGFIIGSLLG TVIIGGIFYV  60
   61 LRRTVYGFWY RGMYKRYGCD ASGTTGGITG VGFGNTTTGA ITVGGTTGGA TTAGTTGGTT 120
  121 GSSTTTGGAS TIAISNGCSE QNKRRAIGAL GTCVMTGYLS SLFH

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.956
Match: 1ob5B
Description: T. aquaticus elongation factor EF-Tu complexed with the antibiotic enacyloxin IIa, a GTP analog, and Phe-tRNA
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle