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View Structure Prediction Details

Protein: CE18025
Organism: Caenorhabditis elegans
Length: 409 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE18025.

Description E-value Query
Range
Subject
Range
CE11364 - WBGene00010241 status:Partially_confirmed TR:Q9XVM2 protein_id:CAB03147.1
415.0 [0..1] [354..283]

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Predicted Domain #1
Region A:
Residues: [1-55]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAGSWKTLL YLKGKTQGIK LCIDPEHFLD DKRAPICKEK FELYIMPRNG LVIWP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [56-245]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSGRASMMEL KPRAIADAEI YVIEVGFGYG DKVNGKLPGE VCTKFMSNSF LKYPGLSVES  60
   61 ALSEMSNRNF WPKFSESKTF FLSLKKKQIS LNTAFFFYVA NMFREVVVSD SEWWDATAAS 120
  121 KVAFFFEKSD DLKENKGIIS QNIEIGKTFI SKKDVGKVHK IDGEGESGDE TGEGKEKLLA 180
  181 PPPPKIEPNI 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [246-409]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTTTVPPVRY INNPDYQTGS NEEENPNTYT PGKWWAWGLF VGFIIGSLLG TVIIGGIFYV  60
   61 LRRTVYGFWY RGMYKRYGCD ASGTTGGITG VGFGNTTTGA ITVGGTTGGA TTAGTTGGTT 120
  121 GSSTTTGGAS TIAISNGCSE QNKRRAIGAL GTCVMTGYLS SLFH

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.956
Match: 1ob5B
Description: T. aquaticus elongation factor EF-Tu complexed with the antibiotic enacyloxin IIa, a GTP analog, and Phe-tRNA
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle