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View Structure Prediction Details

Protein: CE16921
Organism: Caenorhabditis elegans
Length: 397 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE16921.

Description E-value Query
Range
Subject
Range
gi|157759067 - gi|157759067|ref|XP_001671877.1| Hypothetical protein CBG13962 [Caenorhabditis briggsae AF16]
gi|39585988, gi|... - gi|39585988|emb|CAE68279.1| Hypothetical protein CBG13962 [Caenorhabditis briggsae], gi|187028229|em...
250.0 [0..66] [345..1]

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Predicted Domain #1
Region A:
Residues: [1-203]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQIYRSSFQ CFLFFPRSIN SDISTFIFLK LFLLIFFSVG GAHPMFPPNY KSMAPPTNPS  60
   61 FDRFSEMKTV LLLTVASLAA VLGAKPTPTE EVKSEAAAGR YGGRPSYGGG GYGNGGGYGY 120
  121 PAFGPGYWQP LIQDRFVCDL DASVLLVVDS VRRHHRHPQP YYGGAPSVPA NRAVRVKCSE 180
  181 VATHDEDSCN FCCQQTARRD TSL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [204-397]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNDQLFGFLA ITKDDDDETF KRSKRGADDD DDNDSDSDEK DGKHGRGRFH KVDSTYLSEA  60
   61 NWEPKKYHKN VKCVCCAPRS SPAAQNPSYN NNAAQSPPTG YNNNANAFVQ PQPVAAQSPP 120
  121 MSASQPLVDL WQSENTAPST SWGAAPAAPS TSWGAAPAAP PTWGGAPTAA PTWGAANDAP 180
  181 PAATPAPVAA SNAY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle