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View Structure Prediction Details

Protein: CE16921
Organism: Caenorhabditis elegans
Length: 397 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE16921.

Description E-value Query
Range
Subject
Range
gi|157759067 - gi|157759067|ref|XP_001671877.1| Hypothetical protein CBG13962 [Caenorhabditis briggsae AF16]
gi|39585988, gi|... - gi|39585988|emb|CAE68279.1| Hypothetical protein CBG13962 [Caenorhabditis briggsae], gi|187028229|em...
250.0 [0..66] [345..1]

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Predicted Domain #1
Region A:
Residues: [1-203]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQIYRSSFQ CFLFFPRSIN SDISTFIFLK LFLLIFFSVG GAHPMFPPNY KSMAPPTNPS  60
   61 FDRFSEMKTV LLLTVASLAA VLGAKPTPTE EVKSEAAAGR YGGRPSYGGG GYGNGGGYGY 120
  121 PAFGPGYWQP LIQDRFVCDL DASVLLVVDS VRRHHRHPQP YYGGAPSVPA NRAVRVKCSE 180
  181 VATHDEDSCN FCCQQTARRD TSL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [204-397]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNDQLFGFLA ITKDDDDETF KRSKRGADDD DDNDSDSDEK DGKHGRGRFH KVDSTYLSEA  60
   61 NWEPKKYHKN VKCVCCAPRS SPAAQNPSYN NNAAQSPPTG YNNNANAFVQ PQPVAAQSPP 120
  121 MSASQPLVDL WQSENTAPST SWGAAPAAPS TSWGAAPAAP PTWGGAPTAA PTWGAANDAP 180
  181 PAATPAPVAA SNAY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle