YRC Public Data Repository - Protein Structure Prediction

Protein:	CE16892
Organism:	Caenorhabditis elegans
Length:	131 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE16892.

Description	E-value	Query Range	Subject Range
gi\|3327040 - gi\|3327040\|dbj\|BAA31588.1\| KIAA0613 protein [Homo sapiens]	154.0	[0..2]	[130..556]
gi\|50749126 - gi\|50749126\|ref\|XP_421495.1\| PREDICTED: similar to PDZ-LIM protein cypher1s [Gallus gallus]	153.0	[0..2]	[130..635]
gi\|109089097 - gi\|109089097\|ref\|XP_001085158.1\| PREDICTED: similar to LIM domain binding 3 isoform 2 [Macaca mulatt...	150.0	[0..2]	[130..547]
gi\|11612596, gi\|... - ref\|NP_036048.2\| LIM domain binding 3 [Mus musculus], gi\|11612596\|gb\|AAD42950.2\|AF114378_1 PDZ-LIM ...	150.0	[0..2]	[130..545]
gi\|109503089, gi... - gi\|109503718\|ref\|XP_001059372.1\| PREDICTED: similar to LIM domain binding 3 [Rattus norvegicus], gi\|...	149.0	[0..2]	[130..506]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNECGHCSVK IGEESAILAN GKVWHVNHLL CDLCKCRIND GERCVPQNGV ILCSECHIKT  60
   61 TRPICKGCGE FIKTNFCEAL NSTWHPTCFQ CSVCQKPLKV DFHQLPNRMC VHSDCFWDLQ 120
  121 LRMIVAKDLP K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.0
Match:	2dfyX
Description:	No description for 2dfyX was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits