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View Structure Prediction Details

Protein: CE16664
Organism: Caenorhabditis elegans
Length: 640 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE16664.

Description E-value Query
Range
Subject
Range
CE21354 - status:Partially_confirmed UniProt:Q9N2S5 protein_id:AAF60927.1
316.0 [0..5] [307..27]

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Predicted Domain #1
Region A:
Residues: [1-200]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHPSIVWMV FGVWTLGVKS QVIVQSPNIS TFGTWQPWAR CPEGQYANGM RIKFEEWSED  60
   61 VEIAGLTAVD LRCAAKGGPH SEESVISGES VSGTWQNVQY CPDDKVIVGF SLKVEELQGN 120
  121 YDDAGALNFA AFCGAQFGAR NSKVVLQGDT KSVTRGHWTE DLYCPTGFAV CGIQARVEKN 180
  181 ETQAGIDDTG VNNVQVECCP 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 51.09691
Match: 1vmoA
Description: Vitelline membrane outer protein-I (VMO-I)
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [201-291]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APYDCDASYE AKEVDKYQNN NDYETSHKVL VKSKYEGPAA ADKTEQEFVA KKIMLSLKKK  60
   61 YEQLEFSTAP ADFVYTRNKR QDTDPDYVDG G

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [292-509]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LVLGEDDPEK TSVAPEVESV DSNGEDLAAS SNGEISEIPT VDPTTSGENS ESDPVFEVVD  60
   61 PSSAPPAVAN ADENAWSQQV EQGSSEAPVE MTATEDTAEE TNNESEVEAS TEAPFEVAAT 120
  121 EDSNQAPVDP IFTEAPAEGS QEEQTSDGPV FIPEDGSVHS TEAPFEVAAT EVSEVTHGSG 180
  181 SGPMPEQTDE VPGPWEPVPS PVPEPEDPVP RPELATTT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [510-640]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGLPVQEPED PNPIPEDTVP GPEDTTPGPA VTEEIPEVPE PTEEPPTPTD SEIDSPTPAP  60
   61 APGPEPESPS NYHRLSISMD ELEVLVQQAV AGQNMVITLP VPAHKKLIVE QIVVKCDEHV 120
  121 ISLPALIVKH R

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle