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View Structure Prediction Details

Protein: CE16664
Organism: Caenorhabditis elegans
Length: 640 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE16664.

Description E-value Query
Range
Subject
Range
CE21354 - status:Partially_confirmed UniProt:Q9N2S5 protein_id:AAF60927.1
316.0 [0..5] [307..27]

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Predicted Domain #1
Region A:
Residues: [1-200]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHPSIVWMV FGVWTLGVKS QVIVQSPNIS TFGTWQPWAR CPEGQYANGM RIKFEEWSED  60
   61 VEIAGLTAVD LRCAAKGGPH SEESVISGES VSGTWQNVQY CPDDKVIVGF SLKVEELQGN 120
  121 YDDAGALNFA AFCGAQFGAR NSKVVLQGDT KSVTRGHWTE DLYCPTGFAV CGIQARVEKN 180
  181 ETQAGIDDTG VNNVQVECCP 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 51.09691
Match: 1vmoA
Description: Vitelline membrane outer protein-I (VMO-I)
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [201-291]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APYDCDASYE AKEVDKYQNN NDYETSHKVL VKSKYEGPAA ADKTEQEFVA KKIMLSLKKK  60
   61 YEQLEFSTAP ADFVYTRNKR QDTDPDYVDG G

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [292-509]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LVLGEDDPEK TSVAPEVESV DSNGEDLAAS SNGEISEIPT VDPTTSGENS ESDPVFEVVD  60
   61 PSSAPPAVAN ADENAWSQQV EQGSSEAPVE MTATEDTAEE TNNESEVEAS TEAPFEVAAT 120
  121 EDSNQAPVDP IFTEAPAEGS QEEQTSDGPV FIPEDGSVHS TEAPFEVAAT EVSEVTHGSG 180
  181 SGPMPEQTDE VPGPWEPVPS PVPEPEDPVP RPELATTT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [510-640]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGLPVQEPED PNPIPEDTVP GPEDTTPGPA VTEEIPEVPE PTEEPPTPTD SEIDSPTPAP  60
   61 APGPEPESPS NYHRLSISMD ELEVLVQQAV AGQNMVITLP VPAHKKLIVE QIVVKCDEHV 120
  121 ISLPALIVKH R

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle