YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: pqn-70
Organism: Caenorhabditis elegans
Length: 243 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pqn-70.

Description E-value Query
Range
Subject
Range
gi|187021257, gi... - gi|39591974|emb|CAE75194.1| Hypothetical protein CBG23140 [Caenorhabditis briggsae], gi|187021257|em...
gi|157762942 - gi|157762942|ref|XP_001673813.1| Hypothetical protein CBG23140 [Caenorhabditis briggsae AF16]
158.0 [0..120] [243..187]
pqn-70 - status:Confirmed UniProt:Q22558 protein_id:CAA98546.1
77.0 [0..1] [108..1]

Back

Predicted Domain #1
Region A:
Residues: [1-114]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSSGMGVDA NGKPIKRQPT TNNNNKKAGN NSNNQKKGNN QNNKNNKNQN GGNRNQNRQH  60
   61 HQPPMMQMVP PFGPMGPGGP GGPGFMGPPN GNMNFFNGQN RRNGSGKNNG NRNG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [115-243]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APPSGYNGPS ANNVGQGAIG NNMNGAQPFA GPEPSMEVPG FGKNSNIHEL FGKMIWRKME  60
   61 QINDAALVDQ LQNRIMNLIH DALASQNDKQ QQQQQQQHQQ GFNQQRGMPF GGPGNQNGPF 120
  121 GNNAGFQRF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle