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View Structure Prediction Details

Protein: mboa-2
Organism: Caenorhabditis elegans
Length: 496 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mboa-2.

Description E-value Query
Range
Subject
Range
gi|157762990 - gi|157762990|ref|XP_001673837.1| Hypothetical protein CBG23107 [Caenorhabditis briggsae AF16]
gi|39591950, gi|... - gi|39591950|emb|CAE75170.1| Hypothetical protein CBG23107 [Caenorhabditis briggsae], gi|187021281|em...
370.0 [0..1] [496..3]

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Predicted Domain #1
Region A:
Residues: [1-223]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQQTGRRRR QPSETSNGSL ASSRRSSFAQ NGNSSRKSSE MRGPCEKVVH TAQDSLFSTS  60
   61 SGWTNFRGFF NLSILLLVLS NGRVALENVI KYGILITPLQ WISTFVEHHY SIWSWPNLAL 120
  121 ILCSNIQILS VFGMEKILER GWLGNGFAAV FYTSLVIAHL TIPVVVTLTH KWKNPLWSVV 180
  181 MMGVYVIEAL KFISYGHVNY WARDARRKIT ELKTQVTDLA KKT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [224-329]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CDPKQFWDLK DELSMHQMAA QYPANLTLSN IYYFMAAPTL CYEFKFPRLL RIRKHFLIKR  60
   61 TVELIFLSFL IAALVQQWVV PTVRNSMKPL SEMEYSRCLE RLLKLA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [330-496]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPNHLIWLLF FYTFFHSFLN LIAELLRFAD REFYRDFWNA ETIGYFWKSW NIPVHRFAVR  60
   61 HIYSPMMRNN FSKMSAFFVV FFVSAFFHEY LVSVPLKIFR LWSYYGMMGQ IPLSIITDKV 120
  121 VRGGRTGNII VWLSLIVGQP LAILMYGHDW YILNFGVSAV QNQTVGI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle