| Protein: | nhr-108 |
| Organism: | Caenorhabditis elegans |
| Length: | 338 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-108.
| Description | E-value | Query Range |
Subject Range |
|
|
283.0 | [0..4] | [337..202] |
|
Region A: Residues: [1-93] |
1 11 21 31 41 51
| | | | | |
1 MSKKSENQPC MVCGEISYSI RFGAVSCRAC AEFFRRKIVS KARIPKRCNG ACDLGKYHRK 60
61 TCQSCRFQKC LKIGMLEKVV ASRTPVNRRS ENN
|
| Detection Method: |  |
| Confidence: | 21.522879 |
| Match: | 1lo1A |
| Description: | Steroid hormone receptor Err2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.18770607371139 | bayes_pls_golite062009 |
| protein binding | 0.699012253331291 | bayes_pls_golite062009 |
|
Region A: Residues: [94-338] |
1 11 21 31 41 51
| | | | | |
1 QTILSGLEKA YDKLENSRDN VFDRKNKIPK YCNHQELDDM FEIDIKLIST HFIQFFESKS 60
61 SLENNQNKVL STHFIIRFSL LEVAFRAFGK PTYILPNNDI IDVSKLDKVY QHLETGEDER 120
121 GKNSQVILQR FWQMNEKTMK TEVFPVNLDQ SEFLFLCALI YWDFGIENQS EKCLEECQRM 180
181 RTQVLKELTE YEKSNYPENE LRVAQVIGIL QALQKTLDVI QHSGYISNVY NLKGKQCPLY 240
241 EATNE
|
| Detection Method: | |
| Confidence: | 38.30103 |
| Match: | 1z5xU |
| Description: | hemipteran ecdysone receptor ligand-binding domain complexed with ponasterone A |
Matching Structure (courtesy of the PDB): |
|
